CGAP Documentation

Welcome to CGAP! We are a team of scientists, clinicians, and developers who aim to streamline the clinical genetics workflow. The following locations are different deployments of our data portal:

• cgap-dbmi DBMI production account
• cgap-training demo account for potential users
• cgap-devtest general development/testing account
• cgap-wolf workflow development account

Be warned that features are under active development and may not be stable! Visit the demo account for the best experience. To get started, read the following documentation on the infrastructure and how to work with the data model:

Infrastructure

• CGAP Infrastructure Landing Page
• Local Installation
• Infrastructure Overview
• Dataflow Overview
• Variant Representation
• How to Provision Annotations
• CGAP-Docker (Local)
• CGAP-Docker (Production)

Data Model

• Updating Items from Ontologies